[29] | 1 | // (C) Copyright Jeremy Siek 2004 |
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| 2 | // Distributed under the Boost Software License, Version 1.0. (See |
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| 3 | // accompanying file LICENSE_1_0.txt or copy at |
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| 4 | // http://www.boost.org/LICENSE_1_0.txt) |
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| 5 | |
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| 6 | /* |
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| 7 | Fri Aug 15 16:29:47 EDT 1997 |
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| 8 | |
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| 9 | Harwell-Boeing File I/O in C |
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| 10 | V. 1.0 |
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| 11 | |
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| 12 | National Institute of Standards and Technology, MD. |
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| 13 | K.A. Remington |
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| 14 | |
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| 15 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ |
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| 16 | NOTICE |
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| 17 | |
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| 18 | Permission to use, copy, modify, and distribute this software and |
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| 19 | its documentation for any purpose and without fee is hereby granted |
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| 20 | provided that the above copyright notice appear in all copies and |
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| 21 | that both the copyright notice and this permission notice appear in |
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| 22 | supporting documentation. |
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| 23 | |
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| 24 | Neither the Author nor the Institution (National Institute of Standards |
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| 25 | and Technology) make any representations about the suitability of this |
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| 26 | software for any purpose. This software is provided "as is" without |
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| 27 | expressed or implied warranty. |
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| 28 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ |
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| 29 | |
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| 30 | --------------------- |
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| 31 | INTERFACE DESCRIPTION |
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| 32 | --------------------- |
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| 33 | --------------- |
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| 34 | QUERY FUNCTIONS |
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| 35 | --------------- |
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| 36 | |
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| 37 | FUNCTION: |
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| 38 | |
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| 39 | int readHB_info(const char *filename, int *M, int *N, int *nz, |
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| 40 | char **Type, int *Nrhs) |
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| 41 | |
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| 42 | DESCRIPTION: |
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| 43 | |
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| 44 | The readHB_info function opens and reads the header information from |
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| 45 | the specified Harwell-Boeing file, and reports back the number of rows |
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| 46 | and columns in the stored matrix (M and N), the number of nonzeros in |
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| 47 | the matrix (nz), the 3-character matrix type(Type), and the number of |
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| 48 | right-hand-sides stored along with the matrix (Nrhs). This function |
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| 49 | is designed to retrieve basic size information which can be used to |
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| 50 | allocate arrays. |
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| 51 | |
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| 52 | FUNCTION: |
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| 53 | |
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| 54 | int readHB_header(FILE* in_file, char* Title, char* Key, char* Type, |
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| 55 | int* Nrow, int* Ncol, int* Nnzero, int* Nrhs, |
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| 56 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
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| 57 | int* Ptrcrd, int* Indcrd, int* Valcrd, int* Rhscrd, |
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| 58 | char *Rhstype) |
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| 59 | |
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| 60 | DESCRIPTION: |
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| 61 | |
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| 62 | More detailed than the readHB_info function, readHB_header() reads from |
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| 63 | the specified Harwell-Boeing file all of the header information. |
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| 64 | |
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| 65 | |
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| 66 | ------------------------------ |
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| 67 | DOUBLE PRECISION I/O FUNCTIONS |
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| 68 | ------------------------------ |
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| 69 | FUNCTION: |
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| 70 | |
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| 71 | int readHB_newmat_double(const char *filename, int *M, int *N, *int nz, |
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| 72 | int **colptr, int **rowind, double**val) |
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| 73 | |
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| 74 | int readHB_mat_double(const char *filename, int *colptr, int *rowind, |
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| 75 | double*val) |
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| 76 | |
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| 77 | |
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| 78 | DESCRIPTION: |
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| 79 | |
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| 80 | This function opens and reads the specified file, interpreting its |
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| 81 | contents as a sparse matrix stored in the Harwell/Boeing standard |
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| 82 | format. (See readHB_aux_double to read auxillary vectors.) |
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| 83 | -- Values are interpreted as double precision numbers. -- |
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| 84 | |
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| 85 | The "mat" function uses _pre-allocated_ vectors to hold the index and |
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| 86 | nonzero value information. |
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| 87 | |
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| 88 | The "newmat" function allocates vectors to hold the index and nonzero |
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| 89 | value information, and returns pointers to these vectors along with |
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| 90 | matrix dimension and number of nonzeros. |
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| 91 | |
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| 92 | FUNCTION: |
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| 93 | |
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| 94 | int readHB_aux_double(const char* filename, const char AuxType, double b[]) |
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| 95 | |
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| 96 | int readHB_newaux_double(const char* filename, const char AuxType, double** b) |
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| 97 | |
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| 98 | DESCRIPTION: |
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| 99 | |
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| 100 | This function opens and reads from the specified file auxillary vector(s). |
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| 101 | The char argument Auxtype determines which type of auxillary vector(s) |
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| 102 | will be read (if present in the file). |
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| 103 | |
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| 104 | AuxType = 'F' right-hand-side |
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| 105 | AuxType = 'G' initial estimate (Guess) |
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| 106 | AuxType = 'X' eXact solution |
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| 107 | |
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| 108 | If Nrhs > 1, all of the Nrhs vectors of the given type are read and |
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| 109 | stored in column-major order in the vector b. |
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| 110 | |
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| 111 | The "newaux" function allocates a vector to hold the values retrieved. |
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| 112 | The "mat" function uses a _pre-allocated_ vector to hold the values. |
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| 113 | |
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| 114 | FUNCTION: |
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| 115 | |
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| 116 | int writeHB_mat_double(const char* filename, int M, int N, |
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| 117 | int nz, const int colptr[], const int rowind[], |
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| 118 | const double val[], int Nrhs, const double rhs[], |
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| 119 | const double guess[], const double exact[], |
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| 120 | const char* Title, const char* Key, const char* Type, |
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| 121 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
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| 122 | const char* Rhstype) |
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| 123 | |
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| 124 | DESCRIPTION: |
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| 125 | |
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| 126 | The writeHB_mat_double function opens the named file and writes the specified |
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| 127 | matrix and optional auxillary vector(s) to that file in Harwell-Boeing |
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| 128 | format. The format arguments (Ptrfmt,Indfmt,Valfmt, and Rhsfmt) are |
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| 129 | character strings specifying "Fortran-style" output formats -- as they |
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| 130 | would appear in a Harwell-Boeing file. They are used to produce output |
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| 131 | which is as close as possible to what would be produced by Fortran code, |
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| 132 | but note that "D" and "P" edit descriptors are not supported. |
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| 133 | If NULL, the following defaults will be used: |
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| 134 | Ptrfmt = Indfmt = "(8I10)" |
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| 135 | Valfmt = Rhsfmt = "(4E20.13)" |
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| 136 | |
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| 137 | ----------------------- |
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| 138 | CHARACTER I/O FUNCTIONS |
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| 139 | ----------------------- |
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| 140 | FUNCTION: |
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| 141 | |
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| 142 | int readHB_mat_char(const char* filename, int colptr[], int rowind[], |
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| 143 | char val[], char* Valfmt) |
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| 144 | int readHB_newmat_char(const char* filename, int* M, int* N, int* nonzeros, |
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| 145 | int** colptr, int** rowind, char** val, char** Valfmt) |
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| 146 | |
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| 147 | DESCRIPTION: |
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| 148 | |
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| 149 | This function opens and reads the specified file, interpreting its |
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| 150 | contents as a sparse matrix stored in the Harwell/Boeing standard |
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| 151 | format. (See readHB_aux_char to read auxillary vectors.) |
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| 152 | -- Values are interpreted as char strings. -- |
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| 153 | (Used to translate exact values from the file into a new storage format.) |
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| 154 | |
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| 155 | The "mat" function uses _pre-allocated_ arrays to hold the index and |
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| 156 | nonzero value information. |
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| 157 | |
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| 158 | The "newmat" function allocates char arrays to hold the index |
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| 159 | and nonzero value information, and returns pointers to these arrays |
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| 160 | along with matrix dimension and number of nonzeros. |
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| 161 | |
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| 162 | FUNCTION: |
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| 163 | |
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| 164 | int readHB_aux_char(const char* filename, const char AuxType, char b[]) |
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| 165 | int readHB_newaux_char(const char* filename, const char AuxType, char** b, |
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| 166 | char** Rhsfmt) |
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| 167 | |
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| 168 | DESCRIPTION: |
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| 169 | |
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| 170 | This function opens and reads from the specified file auxillary vector(s). |
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| 171 | The char argument Auxtype determines which type of auxillary vector(s) |
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| 172 | will be read (if present in the file). |
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| 173 | |
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| 174 | AuxType = 'F' right-hand-side |
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| 175 | AuxType = 'G' initial estimate (Guess) |
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| 176 | AuxType = 'X' eXact solution |
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| 177 | |
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| 178 | If Nrhs > 1, all of the Nrhs vectors of the given type are read and |
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| 179 | stored in column-major order in the vector b. |
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| 180 | |
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| 181 | The "newaux" function allocates a character array to hold the values |
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| 182 | retrieved. |
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| 183 | The "mat" function uses a _pre-allocated_ array to hold the values. |
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| 184 | |
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| 185 | FUNCTION: |
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| 186 | |
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| 187 | int writeHB_mat_char(const char* filename, int M, int N, |
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| 188 | int nz, const int colptr[], const int rowind[], |
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| 189 | const char val[], int Nrhs, const char rhs[], |
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| 190 | const char guess[], const char exact[], |
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| 191 | const char* Title, const char* Key, const char* Type, |
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| 192 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
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| 193 | const char* Rhstype) |
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| 194 | |
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| 195 | DESCRIPTION: |
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| 196 | |
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| 197 | The writeHB_mat_char function opens the named file and writes the specified |
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| 198 | matrix and optional auxillary vector(s) to that file in Harwell-Boeing |
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| 199 | format. The format arguments (Ptrfmt,Indfmt,Valfmt, and Rhsfmt) are |
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| 200 | character strings specifying "Fortran-style" output formats -- as they |
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| 201 | would appear in a Harwell-Boeing file. Valfmt and Rhsfmt must accurately |
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| 202 | represent the character representation of the values stored in val[] |
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| 203 | and rhs[]. |
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| 204 | |
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| 205 | If NULL, the following defaults will be used for the integer vectors: |
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| 206 | Ptrfmt = Indfmt = "(8I10)" |
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| 207 | Valfmt = Rhsfmt = "(4E20.13)" |
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| 208 | |
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| 209 | |
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| 210 | */ |
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| 211 | |
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| 212 | /*---------------------------------------------------------------------*/ |
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| 213 | /* If zero-based indexing is desired, _SP_base should be set to 0 */ |
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| 214 | /* This will cause indices read from H-B files to be decremented by 1 */ |
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| 215 | /* and indices written to H-B files to be incremented by 1 */ |
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| 216 | /* <<< Standard usage is _SP_base = 1 >>> */ |
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| 217 | #ifndef _SP_base |
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| 218 | #define _SP_base 1 |
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| 219 | #endif |
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| 220 | /*---------------------------------------------------------------------*/ |
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| 221 | |
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| 222 | #include "iohb.h" |
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| 223 | #include<stdio.h> |
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| 224 | #include<stdlib.h> |
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| 225 | #include<string.h> |
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| 226 | #include<math.h> |
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| 227 | |
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| 228 | char* substr(const char* S, const int pos, const int len); |
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| 229 | void upcase(char* S); |
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| 230 | void IOHBTerminate(char* message); |
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| 231 | |
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| 232 | int readHB_info(const char* filename, int* M, int* N, int* nz, char** Type, |
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| 233 | int* Nrhs) |
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| 234 | { |
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| 235 | /****************************************************************************/ |
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| 236 | /* The readHB_info function opens and reads the header information from */ |
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| 237 | /* the specified Harwell-Boeing file, and reports back the number of rows */ |
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| 238 | /* and columns in the stored matrix (M and N), the number of nonzeros in */ |
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| 239 | /* the matrix (nz), and the number of right-hand-sides stored along with */ |
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| 240 | /* the matrix (Nrhs). */ |
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| 241 | /* */ |
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| 242 | /* For a description of the Harwell Boeing standard, see: */ |
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| 243 | /* Duff, et al., ACM TOMS Vol.15, No.1, March 1989 */ |
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| 244 | /* */ |
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| 245 | /* ---------- */ |
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| 246 | /* **CAVEAT** */ |
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| 247 | /* ---------- */ |
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| 248 | /* ** If the input file does not adhere to the H/B format, the ** */ |
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| 249 | /* ** results will be unpredictable. ** */ |
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| 250 | /* */ |
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| 251 | /****************************************************************************/ |
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| 252 | FILE *in_file; |
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| 253 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
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| 254 | int Nrow, Ncol, Nnzero; |
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| 255 | char* mat_type; |
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| 256 | char Title[73], Key[9], Rhstype[4]; |
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| 257 | char Ptrfmt[17], Indfmt[17], Valfmt[21], Rhsfmt[21]; |
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| 258 | |
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| 259 | mat_type = *Type; |
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| 260 | if ( mat_type == NULL ) IOHBTerminate("Insufficient memory for mat_typen"); |
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| 261 | |
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| 262 | if ( (in_file = fopen( filename, "r")) == NULL ) { |
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| 263 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
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| 264 | return 0; |
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| 265 | } |
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| 266 | |
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| 267 | readHB_header(in_file, Title, Key, mat_type, &Nrow, &Ncol, &Nnzero, Nrhs, |
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| 268 | Ptrfmt, Indfmt, Valfmt, Rhsfmt, |
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| 269 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
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| 270 | fclose(in_file); |
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| 271 | *Type = mat_type; |
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| 272 | *(*Type+3) = (char) NULL; |
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| 273 | *M = Nrow; |
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| 274 | *N = Ncol; |
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| 275 | *nz = Nnzero; |
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| 276 | if (Rhscrd == 0) {*Nrhs = 0;} |
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| 277 | |
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| 278 | /* In verbose mode, print some of the header information: */ |
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| 279 | /* |
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| 280 | if (verbose == 1) |
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| 281 | { |
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| 282 | printf("Reading from Harwell-Boeing file %s (verbose on)...\n",filename); |
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| 283 | printf(" Title: %s\n",Title); |
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| 284 | printf(" Key: %s\n",Key); |
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| 285 | printf(" The stored matrix is %i by %i with %i nonzeros.\n", |
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| 286 | *M, *N, *nz ); |
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| 287 | printf(" %i right-hand--side(s) stored.\n",*Nrhs); |
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| 288 | } |
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| 289 | */ |
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| 290 | |
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| 291 | return 1; |
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| 292 | |
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| 293 | } |
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| 294 | |
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| 295 | |
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| 296 | |
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| 297 | int readHB_header(FILE* in_file, char* Title, char* Key, char* Type, |
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| 298 | int* Nrow, int* Ncol, int* Nnzero, int* Nrhs, |
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| 299 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
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| 300 | int* Ptrcrd, int* Indcrd, int* Valcrd, int* Rhscrd, |
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| 301 | char *Rhstype) |
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| 302 | { |
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| 303 | /*************************************************************************/ |
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| 304 | /* Read header information from the named H/B file... */ |
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| 305 | /*************************************************************************/ |
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| 306 | int Totcrd,Neltvl,Nrhsix; |
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| 307 | char line[BUFSIZ]; |
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| 308 | |
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| 309 | /* First line: */ |
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| 310 | fgets(line, BUFSIZ, in_file); |
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| 311 | if ( sscanf(line,"%*s") < 0 ) |
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| 312 | IOHBTerminate("iohb.c: Null (or blank) first line of HB file.\n"); |
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| 313 | (void) sscanf(line, "%72c%8[^\n]", Title, Key); |
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| 314 | *(Key+8) = (char) NULL; |
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| 315 | *(Title+72) = (char) NULL; |
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| 316 | |
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| 317 | /* Second line: */ |
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| 318 | fgets(line, BUFSIZ, in_file); |
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| 319 | if ( sscanf(line,"%*s") < 0 ) |
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| 320 | IOHBTerminate("iohb.c: Null (or blank) second line of HB file.\n"); |
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| 321 | if ( sscanf(line,"%i",&Totcrd) != 1) Totcrd = 0; |
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| 322 | if ( sscanf(line,"%*i%i",Ptrcrd) != 1) *Ptrcrd = 0; |
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| 323 | if ( sscanf(line,"%*i%*i%i",Indcrd) != 1) *Indcrd = 0; |
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| 324 | if ( sscanf(line,"%*i%*i%*i%i",Valcrd) != 1) *Valcrd = 0; |
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| 325 | if ( sscanf(line,"%*i%*i%*i%*i%i",Rhscrd) != 1) *Rhscrd = 0; |
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| 326 | |
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| 327 | /* Third line: */ |
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| 328 | fgets(line, BUFSIZ, in_file); |
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| 329 | if ( sscanf(line,"%*s") < 0 ) |
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| 330 | IOHBTerminate("iohb.c: Null (or blank) third line of HB file.\n"); |
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| 331 | if ( sscanf(line, "%3c", Type) != 1) |
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| 332 | IOHBTerminate("iohb.c: Invalid Type info, line 3 of Harwell-Boeing file.\n"); |
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| 333 | upcase(Type); |
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| 334 | if ( sscanf(line,"%*3c%i",Nrow) != 1) *Nrow = 0 ; |
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| 335 | if ( sscanf(line,"%*3c%*i%i",Ncol) != 1) *Ncol = 0 ; |
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| 336 | if ( sscanf(line,"%*3c%*i%*i%i",Nnzero) != 1) *Nnzero = 0 ; |
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| 337 | if ( sscanf(line,"%*3c%*i%*i%*i%i",&Neltvl) != 1) Neltvl = 0 ; |
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| 338 | |
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| 339 | /* Fourth line: */ |
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| 340 | fgets(line, BUFSIZ, in_file); |
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| 341 | if ( sscanf(line,"%*s") < 0 ) |
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| 342 | IOHBTerminate("iohb.c: Null (or blank) fourth line of HB file.\n"); |
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| 343 | if ( sscanf(line, "%16c",Ptrfmt) != 1) |
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| 344 | IOHBTerminate("iohb.c: Invalid format info, line 4 of Harwell-Boeing file.\n"); |
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| 345 | if ( sscanf(line, "%*16c%16c",Indfmt) != 1) |
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| 346 | IOHBTerminate("iohb.c: Invalid format info, line 4 of Harwell-Boeing file.\n"); |
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| 347 | if ( sscanf(line, "%*16c%*16c%20c",Valfmt) != 1) |
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| 348 | IOHBTerminate("iohb.c: Invalid format info, line 4 of Harwell-Boeing file.\n"); |
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| 349 | sscanf(line, "%*16c%*16c%*20c%20c",Rhsfmt); |
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| 350 | *(Ptrfmt+16) = (char) NULL; |
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| 351 | *(Indfmt+16) = (char) NULL; |
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| 352 | *(Valfmt+20) = (char) NULL; |
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| 353 | *(Rhsfmt+20) = (char) NULL; |
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| 354 | |
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| 355 | /* (Optional) Fifth line: */ |
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| 356 | if (*Rhscrd != 0 ) |
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| 357 | { |
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| 358 | fgets(line, BUFSIZ, in_file); |
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| 359 | if ( sscanf(line,"%*s") < 0 ) |
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| 360 | IOHBTerminate("iohb.c: Null (or blank) fifth line of HB file.\n"); |
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| 361 | if ( sscanf(line, "%3c", Rhstype) != 1) |
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| 362 | IOHBTerminate("iohb.c: Invalid RHS type information, line 5 of Harwell-Boeing file.\n"); |
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| 363 | if ( sscanf(line, "%*3c%i", Nrhs) != 1) *Nrhs = 0; |
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| 364 | if ( sscanf(line, "%*3c%*i%i", &Nrhsix) != 1) Nrhsix = 0; |
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| 365 | } |
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| 366 | return 1; |
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| 367 | } |
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| 368 | |
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| 369 | |
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| 370 | int readHB_mat_double(const char* filename, int colptr[], int rowind[], |
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| 371 | double val[]) |
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| 372 | { |
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| 373 | /****************************************************************************/ |
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| 374 | /* This function opens and reads the specified file, interpreting its */ |
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| 375 | /* contents as a sparse matrix stored in the Harwell/Boeing standard */ |
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| 376 | /* format and creating compressed column storage scheme vectors to hold */ |
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| 377 | /* the index and nonzero value information. */ |
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| 378 | /* */ |
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| 379 | /* ---------- */ |
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| 380 | /* **CAVEAT** */ |
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| 381 | /* ---------- */ |
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| 382 | /* Parsing real formats from Fortran is tricky, and this file reader */ |
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| 383 | /* does not claim to be foolproof. It has been tested for cases when */ |
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| 384 | /* the real values are printed consistently and evenly spaced on each */ |
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| 385 | /* line, with Fixed (F), and Exponential (E or D) formats. */ |
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| 386 | /* */ |
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| 387 | /* ** If the input file does not adhere to the H/B format, the ** */ |
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| 388 | /* ** results will be unpredictable. ** */ |
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| 389 | /* */ |
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| 390 | /****************************************************************************/ |
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| 391 | FILE *in_file; |
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| 392 | int i,j,ind,col,offset,count,last,Nrhs; |
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| 393 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
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| 394 | int Nrow, Ncol, Nnzero, Nentries; |
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| 395 | int Ptrperline, Ptrwidth, Indperline, Indwidth; |
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| 396 | int Valperline, Valwidth, Valprec; |
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| 397 | int Valflag; /* Indicates 'E','D', or 'F' float format */ |
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| 398 | char* ThisElement; |
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| 399 | char Title[73], Key[8], Type[4], Rhstype[4]; |
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| 400 | char Ptrfmt[17], Indfmt[17], Valfmt[21], Rhsfmt[21]; |
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| 401 | char line[BUFSIZ]; |
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| 402 | |
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| 403 | if ( (in_file = fopen( filename, "r")) == NULL ) { |
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| 404 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
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| 405 | return 0; |
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| 406 | } |
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| 407 | |
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| 408 | readHB_header(in_file, Title, Key, Type, &Nrow, &Ncol, &Nnzero, &Nrhs, |
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| 409 | Ptrfmt, Indfmt, Valfmt, Rhsfmt, |
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| 410 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
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| 411 | |
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| 412 | /* Parse the array input formats from Line 3 of HB file */ |
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| 413 | ParseIfmt(Ptrfmt,&Ptrperline,&Ptrwidth); |
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| 414 | ParseIfmt(Indfmt,&Indperline,&Indwidth); |
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| 415 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
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| 416 | ParseRfmt(Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag); |
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| 417 | } |
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| 418 | |
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| 419 | /* Read column pointer array: */ |
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| 420 | |
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| 421 | offset = 1-_SP_base; /* if base 0 storage is declared (via macro definition), */ |
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| 422 | /* then storage entries are offset by 1 */ |
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| 423 | |
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| 424 | ThisElement = (char *) malloc(Ptrwidth+1); |
---|
| 425 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 426 | *(ThisElement+Ptrwidth) = (char) NULL; |
---|
| 427 | count=0; |
---|
| 428 | for (i=0;i<Ptrcrd;i++) |
---|
| 429 | { |
---|
| 430 | fgets(line, BUFSIZ, in_file); |
---|
| 431 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 432 | IOHBTerminate("iohb.c: Null (or blank) line in pointer data region of HB file.\n"); |
---|
| 433 | col = 0; |
---|
| 434 | for (ind = 0;ind<Ptrperline;ind++) |
---|
| 435 | { |
---|
| 436 | if (count > Ncol) break; |
---|
| 437 | strncpy(ThisElement,line+col,Ptrwidth); |
---|
| 438 | /* ThisElement = substr(line,col,Ptrwidth); */ |
---|
| 439 | colptr[count] = atoi(ThisElement)-offset; |
---|
| 440 | count++; col += Ptrwidth; |
---|
| 441 | } |
---|
| 442 | } |
---|
| 443 | free(ThisElement); |
---|
| 444 | |
---|
| 445 | /* Read row index array: */ |
---|
| 446 | |
---|
| 447 | ThisElement = (char *) malloc(Indwidth+1); |
---|
| 448 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 449 | *(ThisElement+Indwidth) = (char) NULL; |
---|
| 450 | count = 0; |
---|
| 451 | for (i=0;i<Indcrd;i++) |
---|
| 452 | { |
---|
| 453 | fgets(line, BUFSIZ, in_file); |
---|
| 454 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 455 | IOHBTerminate("iohb.c: Null (or blank) line in index data region of HB file.\n"); |
---|
| 456 | col = 0; |
---|
| 457 | for (ind = 0;ind<Indperline;ind++) |
---|
| 458 | { |
---|
| 459 | if (count == Nnzero) break; |
---|
| 460 | strncpy(ThisElement,line+col,Indwidth); |
---|
| 461 | /* ThisElement = substr(line,col,Indwidth); */ |
---|
| 462 | rowind[count] = atoi(ThisElement)-offset; |
---|
| 463 | count++; col += Indwidth; |
---|
| 464 | } |
---|
| 465 | } |
---|
| 466 | free(ThisElement); |
---|
| 467 | |
---|
| 468 | /* Read array of values: */ |
---|
| 469 | |
---|
| 470 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 471 | |
---|
| 472 | if ( Type[0] == 'C' ) Nentries = 2*Nnzero; |
---|
| 473 | else Nentries = Nnzero; |
---|
| 474 | |
---|
| 475 | ThisElement = (char *) malloc(Valwidth+1); |
---|
| 476 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 477 | *(ThisElement+Valwidth) = (char) NULL; |
---|
| 478 | count = 0; |
---|
| 479 | for (i=0;i<Valcrd;i++) |
---|
| 480 | { |
---|
| 481 | fgets(line, BUFSIZ, in_file); |
---|
| 482 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 483 | IOHBTerminate("iohb.c: Null (or blank) line in value data region of HB file.\n"); |
---|
| 484 | if (Valflag == 'D') { |
---|
| 485 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 486 | /* *strchr(Valfmt,'D') = 'E'; */ |
---|
| 487 | } |
---|
| 488 | col = 0; |
---|
| 489 | for (ind = 0;ind<Valperline;ind++) |
---|
| 490 | { |
---|
| 491 | if (count == Nentries) break; |
---|
| 492 | strncpy(ThisElement,line+col,Valwidth); |
---|
| 493 | /*ThisElement = substr(line,col,Valwidth);*/ |
---|
| 494 | if ( Valflag != 'F' && strchr(ThisElement,'E') == NULL ) { |
---|
| 495 | /* insert a char prefix for exp */ |
---|
| 496 | last = strlen(ThisElement); |
---|
| 497 | for (j=last+1;j>=0;j--) { |
---|
| 498 | ThisElement[j] = ThisElement[j-1]; |
---|
| 499 | if ( ThisElement[j] == '+' || ThisElement[j] == '-' ) { |
---|
| 500 | ThisElement[j-1] = Valflag; |
---|
| 501 | break; |
---|
| 502 | } |
---|
| 503 | } |
---|
| 504 | } |
---|
| 505 | val[count] = atof(ThisElement); |
---|
| 506 | count++; col += Valwidth; |
---|
| 507 | } |
---|
| 508 | } |
---|
| 509 | free(ThisElement); |
---|
| 510 | } |
---|
| 511 | |
---|
| 512 | fclose(in_file); |
---|
| 513 | return 1; |
---|
| 514 | } |
---|
| 515 | |
---|
| 516 | int readHB_newmat_double(const char* filename, int* M, int* N, int* nonzeros, |
---|
| 517 | int** colptr, int** rowind, double** val) |
---|
| 518 | { |
---|
| 519 | int Nrhs; |
---|
| 520 | char *Type; |
---|
| 521 | |
---|
| 522 | readHB_info(filename, M, N, nonzeros, &Type, &Nrhs); |
---|
| 523 | |
---|
| 524 | *colptr = (int *)malloc((*N+1)*sizeof(int)); |
---|
| 525 | if ( *colptr == NULL ) IOHBTerminate("Insufficient memory for colptr.\n"); |
---|
| 526 | *rowind = (int *)malloc(*nonzeros*sizeof(int)); |
---|
| 527 | if ( *rowind == NULL ) IOHBTerminate("Insufficient memory for rowind.\n"); |
---|
| 528 | if ( Type[0] == 'C' ) { |
---|
| 529 | /* |
---|
| 530 | fprintf(stderr, "Warning: Reading complex data from HB file %s.\n",filename); |
---|
| 531 | fprintf(stderr, " Real and imaginary parts will be interlaced in val[].\n"); |
---|
| 532 | */ |
---|
| 533 | /* Malloc enough space for real AND imaginary parts of val[] */ |
---|
| 534 | *val = (double *)malloc(*nonzeros*sizeof(double)*2); |
---|
| 535 | if ( *val == NULL ) IOHBTerminate("Insufficient memory for val.\n"); |
---|
| 536 | } else { |
---|
| 537 | if ( Type[0] != 'P' ) { |
---|
| 538 | /* Malloc enough space for real array val[] */ |
---|
| 539 | *val = (double *)malloc(*nonzeros*sizeof(double)); |
---|
| 540 | if ( *val == NULL ) IOHBTerminate("Insufficient memory for val.\n"); |
---|
| 541 | } |
---|
| 542 | } /* No val[] space needed if pattern only */ |
---|
| 543 | return readHB_mat_double(filename, *colptr, *rowind, *val); |
---|
| 544 | |
---|
| 545 | } |
---|
| 546 | |
---|
| 547 | int readHB_aux_double(const char* filename, const char AuxType, double b[]) |
---|
| 548 | { |
---|
| 549 | /****************************************************************************/ |
---|
| 550 | /* This function opens and reads the specified file, placing auxillary */ |
---|
| 551 | /* vector(s) of the given type (if available) in b. */ |
---|
| 552 | /* Return value is the number of vectors successfully read. */ |
---|
| 553 | /* */ |
---|
| 554 | /* AuxType = 'F' full right-hand-side vector(s) */ |
---|
| 555 | /* AuxType = 'G' initial Guess vector(s) */ |
---|
| 556 | /* AuxType = 'X' eXact solution vector(s) */ |
---|
| 557 | /* */ |
---|
| 558 | /* ---------- */ |
---|
| 559 | /* **CAVEAT** */ |
---|
| 560 | /* ---------- */ |
---|
| 561 | /* Parsing real formats from Fortran is tricky, and this file reader */ |
---|
| 562 | /* does not claim to be foolproof. It has been tested for cases when */ |
---|
| 563 | /* the real values are printed consistently and evenly spaced on each */ |
---|
| 564 | /* line, with Fixed (F), and Exponential (E or D) formats. */ |
---|
| 565 | /* */ |
---|
| 566 | /* ** If the input file does not adhere to the H/B format, the ** */ |
---|
| 567 | /* ** results will be unpredictable. ** */ |
---|
| 568 | /* */ |
---|
| 569 | /****************************************************************************/ |
---|
| 570 | FILE *in_file; |
---|
| 571 | int i,j,n,maxcol,start,stride,col,last,linel; |
---|
| 572 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
---|
| 573 | int Nrow, Ncol, Nnzero, Nentries; |
---|
| 574 | int Nrhs, nvecs, rhsi; |
---|
| 575 | int Rhsperline, Rhswidth, Rhsprec; |
---|
| 576 | int Rhsflag; |
---|
| 577 | char *ThisElement; |
---|
| 578 | char Title[73], Key[9], Type[4], Rhstype[4]; |
---|
| 579 | char Ptrfmt[17], Indfmt[17], Valfmt[21], Rhsfmt[21]; |
---|
| 580 | char line[BUFSIZ]; |
---|
| 581 | |
---|
| 582 | if ((in_file = fopen( filename, "r")) == NULL) { |
---|
| 583 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 584 | return 0; |
---|
| 585 | } |
---|
| 586 | |
---|
| 587 | readHB_header(in_file, Title, Key, Type, &Nrow, &Ncol, &Nnzero, &Nrhs, |
---|
| 588 | Ptrfmt, Indfmt, Valfmt, Rhsfmt, |
---|
| 589 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
---|
| 590 | |
---|
| 591 | if (Nrhs <= 0) |
---|
| 592 | { |
---|
| 593 | fprintf(stderr, "Warn: Attempt to read auxillary vector(s) when none are present.\n"); |
---|
| 594 | return 0; |
---|
| 595 | } |
---|
| 596 | if (Rhstype[0] != 'F' ) |
---|
| 597 | { |
---|
| 598 | fprintf(stderr,"Warn: Attempt to read auxillary vector(s) which are not stored in Full form.\n"); |
---|
| 599 | fprintf(stderr," Rhs must be specified as full. \n"); |
---|
| 600 | return 0; |
---|
| 601 | } |
---|
| 602 | |
---|
| 603 | /* If reading complex data, allow for interleaved real and imaginary values. */ |
---|
| 604 | if ( Type[0] == 'C' ) { |
---|
| 605 | Nentries = 2*Nrow; |
---|
| 606 | } else { |
---|
| 607 | Nentries = Nrow; |
---|
| 608 | } |
---|
| 609 | |
---|
| 610 | nvecs = 1; |
---|
| 611 | |
---|
| 612 | if ( Rhstype[1] == 'G' ) nvecs++; |
---|
| 613 | if ( Rhstype[2] == 'X' ) nvecs++; |
---|
| 614 | |
---|
| 615 | if ( AuxType == 'G' && Rhstype[1] != 'G' ) { |
---|
| 616 | fprintf(stderr, "Warn: Attempt to read auxillary Guess vector(s) when none are present.\n"); |
---|
| 617 | return 0; |
---|
| 618 | } |
---|
| 619 | if ( AuxType == 'X' && Rhstype[2] != 'X' ) { |
---|
| 620 | fprintf(stderr, "Warn: Attempt to read auxillary eXact solution vector(s) when none are present.\n"); |
---|
| 621 | return 0; |
---|
| 622 | } |
---|
| 623 | |
---|
| 624 | ParseRfmt(Rhsfmt, &Rhsperline, &Rhswidth, &Rhsprec,&Rhsflag); |
---|
| 625 | maxcol = Rhsperline*Rhswidth; |
---|
| 626 | |
---|
| 627 | /* Lines to skip before starting to read RHS values... */ |
---|
| 628 | n = Ptrcrd + Indcrd + Valcrd; |
---|
| 629 | |
---|
| 630 | for (i = 0; i < n; i++) |
---|
| 631 | fgets(line, BUFSIZ, in_file); |
---|
| 632 | |
---|
| 633 | /* start - number of initial aux vector entries to skip */ |
---|
| 634 | /* to reach first vector requested */ |
---|
| 635 | /* stride - number of aux vector entries to skip between */ |
---|
| 636 | /* requested vectors */ |
---|
| 637 | if ( AuxType == 'F' ) start = 0; |
---|
| 638 | else if ( AuxType == 'G' ) start = Nentries; |
---|
| 639 | else start = (nvecs-1)*Nentries; |
---|
| 640 | stride = (nvecs-1)*Nentries; |
---|
| 641 | |
---|
| 642 | fgets(line, BUFSIZ, in_file); |
---|
| 643 | linel= strchr(line,'\n')-line; |
---|
| 644 | col = 0; |
---|
| 645 | /* Skip to initial offset */ |
---|
| 646 | |
---|
| 647 | for (i=0;i<start;i++) { |
---|
| 648 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 649 | fgets(line, BUFSIZ, in_file); |
---|
| 650 | linel= strchr(line,'\n')-line; |
---|
| 651 | col = 0; |
---|
| 652 | } |
---|
| 653 | col += Rhswidth; |
---|
| 654 | } |
---|
| 655 | if (Rhsflag == 'D') { |
---|
| 656 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 657 | } |
---|
| 658 | |
---|
| 659 | /* Read a vector of desired type, then skip to next */ |
---|
| 660 | /* repeating to fill Nrhs vectors */ |
---|
| 661 | |
---|
| 662 | ThisElement = (char *) malloc(Rhswidth+1); |
---|
| 663 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 664 | *(ThisElement+Rhswidth) = (char) NULL; |
---|
| 665 | for (rhsi=0;rhsi<Nrhs;rhsi++) { |
---|
| 666 | |
---|
| 667 | for (i=0;i<Nentries;i++) { |
---|
| 668 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 669 | fgets(line, BUFSIZ, in_file); |
---|
| 670 | linel= strchr(line,'\n')-line; |
---|
| 671 | if (Rhsflag == 'D') { |
---|
| 672 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 673 | } |
---|
| 674 | col = 0; |
---|
| 675 | } |
---|
| 676 | strncpy(ThisElement,line+col,Rhswidth); |
---|
| 677 | /*ThisElement = substr(line, col, Rhswidth);*/ |
---|
| 678 | if ( Rhsflag != 'F' && strchr(ThisElement,'E') == NULL ) { |
---|
| 679 | /* insert a char prefix for exp */ |
---|
| 680 | last = strlen(ThisElement); |
---|
| 681 | for (j=last+1;j>=0;j--) { |
---|
| 682 | ThisElement[j] = ThisElement[j-1]; |
---|
| 683 | if ( ThisElement[j] == '+' || ThisElement[j] == '-' ) { |
---|
| 684 | ThisElement[j-1] = Rhsflag; |
---|
| 685 | break; |
---|
| 686 | } |
---|
| 687 | } |
---|
| 688 | } |
---|
| 689 | b[i] = atof(ThisElement); |
---|
| 690 | col += Rhswidth; |
---|
| 691 | } |
---|
| 692 | |
---|
| 693 | /* Skip any interleaved Guess/eXact vectors */ |
---|
| 694 | |
---|
| 695 | for (i=0;i<stride;i++) { |
---|
| 696 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 697 | fgets(line, BUFSIZ, in_file); |
---|
| 698 | linel= strchr(line,'\n')-line; |
---|
| 699 | col = 0; |
---|
| 700 | } |
---|
| 701 | col += Rhswidth; |
---|
| 702 | } |
---|
| 703 | |
---|
| 704 | } |
---|
| 705 | free(ThisElement); |
---|
| 706 | |
---|
| 707 | |
---|
| 708 | fclose(in_file); |
---|
| 709 | return Nrhs; |
---|
| 710 | } |
---|
| 711 | |
---|
| 712 | int readHB_newaux_double(const char* filename, const char AuxType, double** b) |
---|
| 713 | { |
---|
| 714 | int Nrhs,M,N,nonzeros; |
---|
| 715 | char *Type; |
---|
| 716 | |
---|
| 717 | readHB_info(filename, &M, &N, &nonzeros, &Type, &Nrhs); |
---|
| 718 | if ( Nrhs <= 0 ) { |
---|
| 719 | fprintf(stderr,"Warn: Requested read of aux vector(s) when none are present.\n"); |
---|
| 720 | return 0; |
---|
| 721 | } else { |
---|
| 722 | if ( Type[0] == 'C' ) { |
---|
| 723 | fprintf(stderr, "Warning: Reading complex aux vector(s) from HB file %s.",filename); |
---|
| 724 | fprintf(stderr, " Real and imaginary parts will be interlaced in b[]."); |
---|
| 725 | *b = (double *)malloc(M*Nrhs*sizeof(double)*2); |
---|
| 726 | if ( *b == NULL ) IOHBTerminate("Insufficient memory for rhs.\n"); |
---|
| 727 | return readHB_aux_double(filename, AuxType, *b); |
---|
| 728 | } else { |
---|
| 729 | *b = (double *)malloc(M*Nrhs*sizeof(double)); |
---|
| 730 | if ( *b == NULL ) IOHBTerminate("Insufficient memory for rhs.\n"); |
---|
| 731 | return readHB_aux_double(filename, AuxType, *b); |
---|
| 732 | } |
---|
| 733 | } |
---|
| 734 | } |
---|
| 735 | |
---|
| 736 | int writeHB_mat_double(const char* filename, int M, int N, |
---|
| 737 | int nz, const int colptr[], const int rowind[], |
---|
| 738 | const double val[], int Nrhs, const double rhs[], |
---|
| 739 | const double guess[], const double exact[], |
---|
| 740 | const char* Title, const char* Key, const char* Type, |
---|
| 741 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
---|
| 742 | const char* Rhstype) |
---|
| 743 | { |
---|
| 744 | /****************************************************************************/ |
---|
| 745 | /* The writeHB function opens the named file and writes the specified */ |
---|
| 746 | /* matrix and optional right-hand-side(s) to that file in Harwell-Boeing */ |
---|
| 747 | /* format. */ |
---|
| 748 | /* */ |
---|
| 749 | /* For a description of the Harwell Boeing standard, see: */ |
---|
| 750 | /* Duff, et al., ACM TOMS Vol.15, No.1, March 1989 */ |
---|
| 751 | /* */ |
---|
| 752 | /****************************************************************************/ |
---|
| 753 | FILE *out_file; |
---|
| 754 | int i,j,entry,offset,acount,linemod; |
---|
| 755 | int totcrd, ptrcrd, indcrd, valcrd, rhscrd; |
---|
| 756 | int nvalentries, nrhsentries; |
---|
| 757 | int Ptrperline, Ptrwidth, Indperline, Indwidth; |
---|
| 758 | int Rhsperline, Rhswidth, Rhsprec; |
---|
| 759 | int Rhsflag; |
---|
| 760 | int Valperline, Valwidth, Valprec; |
---|
| 761 | int Valflag; /* Indicates 'E','D', or 'F' float format */ |
---|
| 762 | char pformat[16],iformat[16],vformat[19],rformat[19]; |
---|
| 763 | |
---|
| 764 | if ( Type[0] == 'C' ) { |
---|
| 765 | nvalentries = 2*nz; |
---|
| 766 | nrhsentries = 2*M; |
---|
| 767 | } else { |
---|
| 768 | nvalentries = nz; |
---|
| 769 | nrhsentries = M; |
---|
| 770 | } |
---|
| 771 | |
---|
| 772 | if ( filename != NULL ) { |
---|
| 773 | if ( (out_file = fopen( filename, "w")) == NULL ) { |
---|
| 774 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 775 | return 0; |
---|
| 776 | } |
---|
| 777 | } else out_file = stdout; |
---|
| 778 | |
---|
| 779 | if ( Ptrfmt == NULL ) Ptrfmt = "(8I10)"; |
---|
| 780 | ParseIfmt(Ptrfmt,&Ptrperline,&Ptrwidth); |
---|
| 781 | sprintf(pformat,"%%%dd",Ptrwidth); |
---|
| 782 | ptrcrd = (N+1)/Ptrperline; |
---|
| 783 | if ( (N+1)%Ptrperline != 0) ptrcrd++; |
---|
| 784 | |
---|
| 785 | if ( Indfmt == NULL ) Indfmt = Ptrfmt; |
---|
| 786 | ParseIfmt(Indfmt,&Indperline,&Indwidth); |
---|
| 787 | sprintf(iformat,"%%%dd",Indwidth); |
---|
| 788 | indcrd = nz/Indperline; |
---|
| 789 | if ( nz%Indperline != 0) indcrd++; |
---|
| 790 | |
---|
| 791 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 792 | if ( Valfmt == NULL ) Valfmt = "(4E20.13)"; |
---|
| 793 | ParseRfmt(Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag); |
---|
| 794 | if (Valflag == 'D') *strchr(Valfmt,'D') = 'E'; |
---|
| 795 | if (Valflag == 'F') |
---|
| 796 | sprintf(vformat,"%% %d.%df",Valwidth,Valprec); |
---|
| 797 | else |
---|
| 798 | sprintf(vformat,"%% %d.%dE",Valwidth,Valprec); |
---|
| 799 | valcrd = nvalentries/Valperline; |
---|
| 800 | if ( nvalentries%Valperline != 0) valcrd++; |
---|
| 801 | } else valcrd = 0; |
---|
| 802 | |
---|
| 803 | if ( Nrhs > 0 ) { |
---|
| 804 | if ( Rhsfmt == NULL ) Rhsfmt = Valfmt; |
---|
| 805 | ParseRfmt(Rhsfmt,&Rhsperline,&Rhswidth,&Rhsprec, &Rhsflag); |
---|
| 806 | if (Rhsflag == 'F') |
---|
| 807 | sprintf(rformat,"%% %d.%df",Rhswidth,Rhsprec); |
---|
| 808 | else |
---|
| 809 | sprintf(rformat,"%% %d.%dE",Rhswidth,Rhsprec); |
---|
| 810 | if (Rhsflag == 'D') *strchr(Rhsfmt,'D') = 'E'; |
---|
| 811 | rhscrd = nrhsentries/Rhsperline; |
---|
| 812 | if ( nrhsentries%Rhsperline != 0) rhscrd++; |
---|
| 813 | if ( Rhstype[1] == 'G' ) rhscrd+=rhscrd; |
---|
| 814 | if ( Rhstype[2] == 'X' ) rhscrd+=rhscrd; |
---|
| 815 | rhscrd*=Nrhs; |
---|
| 816 | } else rhscrd = 0; |
---|
| 817 | |
---|
| 818 | totcrd = 4+ptrcrd+indcrd+valcrd+rhscrd; |
---|
| 819 | |
---|
| 820 | |
---|
| 821 | /* Print header information: */ |
---|
| 822 | |
---|
| 823 | fprintf(out_file,"%-72s%-8s\n%14d%14d%14d%14d%14d\n",Title, Key, totcrd, |
---|
| 824 | ptrcrd, indcrd, valcrd, rhscrd); |
---|
| 825 | fprintf(out_file,"%3s%11s%14d%14d%14d\n",Type," ", M, N, nz); |
---|
| 826 | fprintf(out_file,"%-16s%-16s%-20s", Ptrfmt, Indfmt, Valfmt); |
---|
| 827 | if ( Nrhs != 0 ) { |
---|
| 828 | /* Print Rhsfmt on fourth line and */ |
---|
| 829 | /* optional fifth header line for auxillary vector information: */ |
---|
| 830 | fprintf(out_file,"%-20s\n%-14s%d\n",Rhsfmt,Rhstype,Nrhs); |
---|
| 831 | } else fprintf(out_file,"\n"); |
---|
| 832 | |
---|
| 833 | offset = 1-_SP_base; /* if base 0 storage is declared (via macro definition), */ |
---|
| 834 | /* then storage entries are offset by 1 */ |
---|
| 835 | |
---|
| 836 | /* Print column pointers: */ |
---|
| 837 | for (i=0;i<N+1;i++) |
---|
| 838 | { |
---|
| 839 | entry = colptr[i]+offset; |
---|
| 840 | fprintf(out_file,pformat,entry); |
---|
| 841 | if ( (i+1)%Ptrperline == 0 ) fprintf(out_file,"\n"); |
---|
| 842 | } |
---|
| 843 | |
---|
| 844 | if ( (N+1) % Ptrperline != 0 ) fprintf(out_file,"\n"); |
---|
| 845 | |
---|
| 846 | /* Print row indices: */ |
---|
| 847 | for (i=0;i<nz;i++) |
---|
| 848 | { |
---|
| 849 | entry = rowind[i]+offset; |
---|
| 850 | fprintf(out_file,iformat,entry); |
---|
| 851 | if ( (i+1)%Indperline == 0 ) fprintf(out_file,"\n"); |
---|
| 852 | } |
---|
| 853 | |
---|
| 854 | if ( nz % Indperline != 0 ) fprintf(out_file,"\n"); |
---|
| 855 | |
---|
| 856 | /* Print values: */ |
---|
| 857 | |
---|
| 858 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 859 | |
---|
| 860 | for (i=0;i<nvalentries;i++) |
---|
| 861 | { |
---|
| 862 | fprintf(out_file,vformat,val[i]); |
---|
| 863 | if ( (i+1)%Valperline == 0 ) fprintf(out_file,"\n"); |
---|
| 864 | } |
---|
| 865 | |
---|
| 866 | if ( nvalentries % Valperline != 0 ) fprintf(out_file,"\n"); |
---|
| 867 | |
---|
| 868 | /* If available, print right hand sides, |
---|
| 869 | guess vectors and exact solution vectors: */ |
---|
| 870 | acount = 1; |
---|
| 871 | linemod = 0; |
---|
| 872 | if ( Nrhs > 0 ) { |
---|
| 873 | for (i=0;i<Nrhs;i++) |
---|
| 874 | { |
---|
| 875 | for ( j=0;j<nrhsentries;j++ ) { |
---|
| 876 | fprintf(out_file,rformat,rhs[j]); |
---|
| 877 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 878 | } |
---|
| 879 | if ( acount%Rhsperline != linemod ) { |
---|
| 880 | fprintf(out_file,"\n"); |
---|
| 881 | linemod = (acount-1)%Rhsperline; |
---|
| 882 | } |
---|
| 883 | rhs += nrhsentries; |
---|
| 884 | if ( Rhstype[1] == 'G' ) { |
---|
| 885 | for ( j=0;j<nrhsentries;j++ ) { |
---|
| 886 | fprintf(out_file,rformat,guess[j]); |
---|
| 887 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 888 | } |
---|
| 889 | if ( acount%Rhsperline != linemod ) { |
---|
| 890 | fprintf(out_file,"\n"); |
---|
| 891 | linemod = (acount-1)%Rhsperline; |
---|
| 892 | } |
---|
| 893 | guess += nrhsentries; |
---|
| 894 | } |
---|
| 895 | if ( Rhstype[2] == 'X' ) { |
---|
| 896 | for ( j=0;j<nrhsentries;j++ ) { |
---|
| 897 | fprintf(out_file,rformat,exact[j]); |
---|
| 898 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 899 | } |
---|
| 900 | if ( acount%Rhsperline != linemod ) { |
---|
| 901 | fprintf(out_file,"\n"); |
---|
| 902 | linemod = (acount-1)%Rhsperline; |
---|
| 903 | } |
---|
| 904 | exact += nrhsentries; |
---|
| 905 | } |
---|
| 906 | } |
---|
| 907 | } |
---|
| 908 | |
---|
| 909 | } |
---|
| 910 | |
---|
| 911 | if ( fclose(out_file) != 0){ |
---|
| 912 | fprintf(stderr,"Error closing file in writeHB_mat_double().\n"); |
---|
| 913 | return 0; |
---|
| 914 | } else return 1; |
---|
| 915 | |
---|
| 916 | } |
---|
| 917 | |
---|
| 918 | int readHB_mat_char(const char* filename, int colptr[], int rowind[], |
---|
| 919 | char val[], char* Valfmt) |
---|
| 920 | { |
---|
| 921 | /****************************************************************************/ |
---|
| 922 | /* This function opens and reads the specified file, interpreting its */ |
---|
| 923 | /* contents as a sparse matrix stored in the Harwell/Boeing standard */ |
---|
| 924 | /* format and creating compressed column storage scheme vectors to hold */ |
---|
| 925 | /* the index and nonzero value information. */ |
---|
| 926 | /* */ |
---|
| 927 | /* ---------- */ |
---|
| 928 | /* **CAVEAT** */ |
---|
| 929 | /* ---------- */ |
---|
| 930 | /* Parsing real formats from Fortran is tricky, and this file reader */ |
---|
| 931 | /* does not claim to be foolproof. It has been tested for cases when */ |
---|
| 932 | /* the real values are printed consistently and evenly spaced on each */ |
---|
| 933 | /* line, with Fixed (F), and Exponential (E or D) formats. */ |
---|
| 934 | /* */ |
---|
| 935 | /* ** If the input file does not adhere to the H/B format, the ** */ |
---|
| 936 | /* ** results will be unpredictable. ** */ |
---|
| 937 | /* */ |
---|
| 938 | /****************************************************************************/ |
---|
| 939 | FILE *in_file; |
---|
| 940 | int i,j,ind,col,offset,count,last; |
---|
| 941 | int Nrow,Ncol,Nnzero,Nentries,Nrhs; |
---|
| 942 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
---|
| 943 | int Ptrperline, Ptrwidth, Indperline, Indwidth; |
---|
| 944 | int Valperline, Valwidth, Valprec; |
---|
| 945 | int Valflag; /* Indicates 'E','D', or 'F' float format */ |
---|
| 946 | char* ThisElement; |
---|
| 947 | char line[BUFSIZ]; |
---|
| 948 | char Title[73], Key[8], Type[4], Rhstype[4]; |
---|
| 949 | char Ptrfmt[17], Indfmt[17], Rhsfmt[21]; |
---|
| 950 | |
---|
| 951 | if ( (in_file = fopen( filename, "r")) == NULL ) { |
---|
| 952 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 953 | return 0; |
---|
| 954 | } |
---|
| 955 | |
---|
| 956 | readHB_header(in_file, Title, Key, Type, &Nrow, &Ncol, &Nnzero, &Nrhs, |
---|
| 957 | Ptrfmt, Indfmt, Valfmt, Rhsfmt, |
---|
| 958 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
---|
| 959 | |
---|
| 960 | /* Parse the array input formats from Line 3 of HB file */ |
---|
| 961 | ParseIfmt(Ptrfmt,&Ptrperline,&Ptrwidth); |
---|
| 962 | ParseIfmt(Indfmt,&Indperline,&Indwidth); |
---|
| 963 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 964 | ParseRfmt(Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag); |
---|
| 965 | if (Valflag == 'D') { |
---|
| 966 | *strchr(Valfmt,'D') = 'E'; |
---|
| 967 | } |
---|
| 968 | } |
---|
| 969 | |
---|
| 970 | /* Read column pointer array: */ |
---|
| 971 | |
---|
| 972 | offset = 1-_SP_base; /* if base 0 storage is declared (via macro definition), */ |
---|
| 973 | /* then storage entries are offset by 1 */ |
---|
| 974 | |
---|
| 975 | ThisElement = (char *) malloc(Ptrwidth+1); |
---|
| 976 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 977 | *(ThisElement+Ptrwidth) = (char) NULL; |
---|
| 978 | count=0; |
---|
| 979 | for (i=0;i<Ptrcrd;i++) |
---|
| 980 | { |
---|
| 981 | fgets(line, BUFSIZ, in_file); |
---|
| 982 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 983 | IOHBTerminate("iohb.c: Null (or blank) line in pointer data region of HB file.\n"); |
---|
| 984 | col = 0; |
---|
| 985 | for (ind = 0;ind<Ptrperline;ind++) |
---|
| 986 | { |
---|
| 987 | if (count > Ncol) break; |
---|
| 988 | strncpy(ThisElement,line+col,Ptrwidth); |
---|
| 989 | /*ThisElement = substr(line,col,Ptrwidth);*/ |
---|
| 990 | colptr[count] = atoi(ThisElement)-offset; |
---|
| 991 | count++; col += Ptrwidth; |
---|
| 992 | } |
---|
| 993 | } |
---|
| 994 | free(ThisElement); |
---|
| 995 | |
---|
| 996 | /* Read row index array: */ |
---|
| 997 | |
---|
| 998 | ThisElement = (char *) malloc(Indwidth+1); |
---|
| 999 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 1000 | *(ThisElement+Indwidth) = (char) NULL; |
---|
| 1001 | count = 0; |
---|
| 1002 | for (i=0;i<Indcrd;i++) |
---|
| 1003 | { |
---|
| 1004 | fgets(line, BUFSIZ, in_file); |
---|
| 1005 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1006 | IOHBTerminate("iohb.c: Null (or blank) line in index data region of HB file.\n"); |
---|
| 1007 | col = 0; |
---|
| 1008 | for (ind = 0;ind<Indperline;ind++) |
---|
| 1009 | { |
---|
| 1010 | if (count == Nnzero) break; |
---|
| 1011 | strncpy(ThisElement,line+col,Indwidth); |
---|
| 1012 | /*ThisElement = substr(line,col,Indwidth);*/ |
---|
| 1013 | rowind[count] = atoi(ThisElement)-offset; |
---|
| 1014 | count++; col += Indwidth; |
---|
| 1015 | } |
---|
| 1016 | } |
---|
| 1017 | free(ThisElement); |
---|
| 1018 | |
---|
| 1019 | /* Read array of values: AS CHARACTERS*/ |
---|
| 1020 | |
---|
| 1021 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 1022 | |
---|
| 1023 | if ( Type[0] == 'C' ) Nentries = 2*Nnzero; |
---|
| 1024 | else Nentries = Nnzero; |
---|
| 1025 | |
---|
| 1026 | ThisElement = (char *) malloc(Valwidth+1); |
---|
| 1027 | if ( ThisElement == NULL ) IOHBTerminate("Insufficient memory for ThisElement."); |
---|
| 1028 | *(ThisElement+Valwidth) = (char) NULL; |
---|
| 1029 | count = 0; |
---|
| 1030 | for (i=0;i<Valcrd;i++) |
---|
| 1031 | { |
---|
| 1032 | fgets(line, BUFSIZ, in_file); |
---|
| 1033 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1034 | IOHBTerminate("iohb.c: Null (or blank) line in value data region of HB file.\n"); |
---|
| 1035 | if (Valflag == 'D') { |
---|
| 1036 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 1037 | } |
---|
| 1038 | col = 0; |
---|
| 1039 | for (ind = 0;ind<Valperline;ind++) |
---|
| 1040 | { |
---|
| 1041 | if (count == Nentries) break; |
---|
| 1042 | ThisElement = &val[count*Valwidth]; |
---|
| 1043 | strncpy(ThisElement,line+col,Valwidth); |
---|
| 1044 | /*strncpy(ThisElement,substr(line,col,Valwidth),Valwidth);*/ |
---|
| 1045 | if ( Valflag != 'F' && strchr(ThisElement,'E') == NULL ) { |
---|
| 1046 | /* insert a char prefix for exp */ |
---|
| 1047 | last = strlen(ThisElement); |
---|
| 1048 | for (j=last+1;j>=0;j--) { |
---|
| 1049 | ThisElement[j] = ThisElement[j-1]; |
---|
| 1050 | if ( ThisElement[j] == '+' || ThisElement[j] == '-' ) { |
---|
| 1051 | ThisElement[j-1] = Valflag; |
---|
| 1052 | break; |
---|
| 1053 | } |
---|
| 1054 | } |
---|
| 1055 | } |
---|
| 1056 | count++; col += Valwidth; |
---|
| 1057 | } |
---|
| 1058 | } |
---|
| 1059 | } |
---|
| 1060 | |
---|
| 1061 | return 1; |
---|
| 1062 | } |
---|
| 1063 | |
---|
| 1064 | int readHB_newmat_char(const char* filename, int* M, int* N, int* nonzeros, int** colptr, |
---|
| 1065 | int** rowind, char** val, char** Valfmt) |
---|
| 1066 | { |
---|
| 1067 | FILE *in_file; |
---|
| 1068 | int Nrhs; |
---|
| 1069 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
---|
| 1070 | int Valperline, Valwidth, Valprec; |
---|
| 1071 | int Valflag; /* Indicates 'E','D', or 'F' float format */ |
---|
| 1072 | char Title[73], Key[9], Type[4], Rhstype[4]; |
---|
| 1073 | char Ptrfmt[17], Indfmt[17], Rhsfmt[21]; |
---|
| 1074 | |
---|
| 1075 | if ((in_file = fopen( filename, "r")) == NULL) { |
---|
| 1076 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 1077 | return 0; |
---|
| 1078 | } |
---|
| 1079 | |
---|
| 1080 | *Valfmt = (char *)malloc(21*sizeof(char)); |
---|
| 1081 | if ( *Valfmt == NULL ) IOHBTerminate("Insufficient memory for Valfmt."); |
---|
| 1082 | readHB_header(in_file, Title, Key, Type, M, N, nonzeros, &Nrhs, |
---|
| 1083 | Ptrfmt, Indfmt, (*Valfmt), Rhsfmt, |
---|
| 1084 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
---|
| 1085 | fclose(in_file); |
---|
| 1086 | ParseRfmt(*Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag); |
---|
| 1087 | |
---|
| 1088 | *colptr = (int *)malloc((*N+1)*sizeof(int)); |
---|
| 1089 | if ( *colptr == NULL ) IOHBTerminate("Insufficient memory for colptr.\n"); |
---|
| 1090 | *rowind = (int *)malloc(*nonzeros*sizeof(int)); |
---|
| 1091 | if ( *rowind == NULL ) IOHBTerminate("Insufficient memory for rowind.\n"); |
---|
| 1092 | if ( Type[0] == 'C' ) { |
---|
| 1093 | /* |
---|
| 1094 | fprintf(stderr, "Warning: Reading complex data from HB file %s.\n",filename); |
---|
| 1095 | fprintf(stderr, " Real and imaginary parts will be interlaced in val[].\n"); |
---|
| 1096 | */ |
---|
| 1097 | /* Malloc enough space for real AND imaginary parts of val[] */ |
---|
| 1098 | *val = (char *)malloc(*nonzeros*Valwidth*sizeof(char)*2); |
---|
| 1099 | if ( *val == NULL ) IOHBTerminate("Insufficient memory for val.\n"); |
---|
| 1100 | } else { |
---|
| 1101 | if ( Type[0] != 'P' ) { |
---|
| 1102 | /* Malloc enough space for real array val[] */ |
---|
| 1103 | *val = (char *)malloc(*nonzeros*Valwidth*sizeof(char)); |
---|
| 1104 | if ( *val == NULL ) IOHBTerminate("Insufficient memory for val.\n"); |
---|
| 1105 | } |
---|
| 1106 | } /* No val[] space needed if pattern only */ |
---|
| 1107 | return readHB_mat_char(filename, *colptr, *rowind, *val, *Valfmt); |
---|
| 1108 | |
---|
| 1109 | } |
---|
| 1110 | |
---|
| 1111 | int readHB_aux_char(const char* filename, const char AuxType, char b[]) |
---|
| 1112 | { |
---|
| 1113 | /****************************************************************************/ |
---|
| 1114 | /* This function opens and reads the specified file, placing auxilary */ |
---|
| 1115 | /* vector(s) of the given type (if available) in b : */ |
---|
| 1116 | /* Return value is the number of vectors successfully read. */ |
---|
| 1117 | /* */ |
---|
| 1118 | /* AuxType = 'F' full right-hand-side vector(s) */ |
---|
| 1119 | /* AuxType = 'G' initial Guess vector(s) */ |
---|
| 1120 | /* AuxType = 'X' eXact solution vector(s) */ |
---|
| 1121 | /* */ |
---|
| 1122 | /* ---------- */ |
---|
| 1123 | /* **CAVEAT** */ |
---|
| 1124 | /* ---------- */ |
---|
| 1125 | /* Parsing real formats from Fortran is tricky, and this file reader */ |
---|
| 1126 | /* does not claim to be foolproof. It has been tested for cases when */ |
---|
| 1127 | /* the real values are printed consistently and evenly spaced on each */ |
---|
| 1128 | /* line, with Fixed (F), and Exponential (E or D) formats. */ |
---|
| 1129 | /* */ |
---|
| 1130 | /* ** If the input file does not adhere to the H/B format, the ** */ |
---|
| 1131 | /* ** results will be unpredictable. ** */ |
---|
| 1132 | /* */ |
---|
| 1133 | /****************************************************************************/ |
---|
| 1134 | FILE *in_file; |
---|
| 1135 | int i,j,n,maxcol,start,stride,col,last,linel,nvecs,rhsi; |
---|
| 1136 | int Nrow, Ncol, Nnzero, Nentries,Nrhs; |
---|
| 1137 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
---|
| 1138 | int Rhsperline, Rhswidth, Rhsprec; |
---|
| 1139 | int Rhsflag; |
---|
| 1140 | char Title[73], Key[9], Type[4], Rhstype[4]; |
---|
| 1141 | char Ptrfmt[17], Indfmt[17], Valfmt[21], Rhsfmt[21]; |
---|
| 1142 | char line[BUFSIZ]; |
---|
| 1143 | char *ThisElement; |
---|
| 1144 | |
---|
| 1145 | if ((in_file = fopen( filename, "r")) == NULL) { |
---|
| 1146 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 1147 | return 0; |
---|
| 1148 | } |
---|
| 1149 | |
---|
| 1150 | readHB_header(in_file, Title, Key, Type, &Nrow, &Ncol, &Nnzero, &Nrhs, |
---|
| 1151 | Ptrfmt, Indfmt, Valfmt, Rhsfmt, |
---|
| 1152 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
---|
| 1153 | |
---|
| 1154 | if (Nrhs <= 0) |
---|
| 1155 | { |
---|
| 1156 | fprintf(stderr, "Warn: Attempt to read auxillary vector(s) when none are present.\n"); |
---|
| 1157 | return 0; |
---|
| 1158 | } |
---|
| 1159 | if (Rhstype[0] != 'F' ) |
---|
| 1160 | { |
---|
| 1161 | fprintf(stderr,"Warn: Attempt to read auxillary vector(s) which are not stored in Full form.\n"); |
---|
| 1162 | fprintf(stderr," Rhs must be specified as full. \n"); |
---|
| 1163 | return 0; |
---|
| 1164 | } |
---|
| 1165 | |
---|
| 1166 | /* If reading complex data, allow for interleaved real and imaginary values. */ |
---|
| 1167 | if ( Type[0] == 'C' ) { |
---|
| 1168 | Nentries = 2*Nrow; |
---|
| 1169 | } else { |
---|
| 1170 | Nentries = Nrow; |
---|
| 1171 | } |
---|
| 1172 | |
---|
| 1173 | nvecs = 1; |
---|
| 1174 | |
---|
| 1175 | if ( Rhstype[1] == 'G' ) nvecs++; |
---|
| 1176 | if ( Rhstype[2] == 'X' ) nvecs++; |
---|
| 1177 | |
---|
| 1178 | if ( AuxType == 'G' && Rhstype[1] != 'G' ) { |
---|
| 1179 | fprintf(stderr, "Warn: Attempt to read auxillary Guess vector(s) when none are present.\n"); |
---|
| 1180 | return 0; |
---|
| 1181 | } |
---|
| 1182 | if ( AuxType == 'X' && Rhstype[2] != 'X' ) { |
---|
| 1183 | fprintf(stderr, "Warn: Attempt to read auxillary eXact solution vector(s) when none are present.\n"); |
---|
| 1184 | return 0; |
---|
| 1185 | } |
---|
| 1186 | |
---|
| 1187 | ParseRfmt(Rhsfmt, &Rhsperline, &Rhswidth, &Rhsprec,&Rhsflag); |
---|
| 1188 | maxcol = Rhsperline*Rhswidth; |
---|
| 1189 | |
---|
| 1190 | /* Lines to skip before starting to read RHS values... */ |
---|
| 1191 | n = Ptrcrd + Indcrd + Valcrd; |
---|
| 1192 | |
---|
| 1193 | for (i = 0; i < n; i++) |
---|
| 1194 | fgets(line, BUFSIZ, in_file); |
---|
| 1195 | |
---|
| 1196 | /* start - number of initial aux vector entries to skip */ |
---|
| 1197 | /* to reach first vector requested */ |
---|
| 1198 | /* stride - number of aux vector entries to skip between */ |
---|
| 1199 | /* requested vectors */ |
---|
| 1200 | if ( AuxType == 'F' ) start = 0; |
---|
| 1201 | else if ( AuxType == 'G' ) start = Nentries; |
---|
| 1202 | else start = (nvecs-1)*Nentries; |
---|
| 1203 | stride = (nvecs-1)*Nentries; |
---|
| 1204 | |
---|
| 1205 | fgets(line, BUFSIZ, in_file); |
---|
| 1206 | linel= strchr(line,'\n')-line; |
---|
| 1207 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1208 | IOHBTerminate("iohb.c: Null (or blank) line in auxillary vector data region of HB file.\n"); |
---|
| 1209 | col = 0; |
---|
| 1210 | /* Skip to initial offset */ |
---|
| 1211 | |
---|
| 1212 | for (i=0;i<start;i++) { |
---|
| 1213 | col += Rhswidth; |
---|
| 1214 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 1215 | fgets(line, BUFSIZ, in_file); |
---|
| 1216 | linel= strchr(line,'\n')-line; |
---|
| 1217 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1218 | IOHBTerminate("iohb.c: Null (or blank) line in auxillary vector data region of HB file.\n"); |
---|
| 1219 | col = 0; |
---|
| 1220 | } |
---|
| 1221 | } |
---|
| 1222 | |
---|
| 1223 | if (Rhsflag == 'D') { |
---|
| 1224 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 1225 | } |
---|
| 1226 | /* Read a vector of desired type, then skip to next */ |
---|
| 1227 | /* repeating to fill Nrhs vectors */ |
---|
| 1228 | |
---|
| 1229 | for (rhsi=0;rhsi<Nrhs;rhsi++) { |
---|
| 1230 | |
---|
| 1231 | for (i=0;i<Nentries;i++) { |
---|
| 1232 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 1233 | fgets(line, BUFSIZ, in_file); |
---|
| 1234 | linel= strchr(line,'\n')-line; |
---|
| 1235 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1236 | IOHBTerminate("iohb.c: Null (or blank) line in auxillary vector data region of HB file.\n"); |
---|
| 1237 | if (Rhsflag == 'D') { |
---|
| 1238 | while( strchr(line,'D') ) *strchr(line,'D') = 'E'; |
---|
| 1239 | } |
---|
| 1240 | col = 0; |
---|
| 1241 | } |
---|
| 1242 | ThisElement = &b[i*Rhswidth]; |
---|
| 1243 | strncpy(ThisElement,line+col,Rhswidth); |
---|
| 1244 | if ( Rhsflag != 'F' && strchr(ThisElement,'E') == NULL ) { |
---|
| 1245 | /* insert a char prefix for exp */ |
---|
| 1246 | last = strlen(ThisElement); |
---|
| 1247 | for (j=last+1;j>=0;j--) { |
---|
| 1248 | ThisElement[j] = ThisElement[j-1]; |
---|
| 1249 | if ( ThisElement[j] == '+' || ThisElement[j] == '-' ) { |
---|
| 1250 | ThisElement[j-1] = Rhsflag; |
---|
| 1251 | break; |
---|
| 1252 | } |
---|
| 1253 | } |
---|
| 1254 | } |
---|
| 1255 | col += Rhswidth; |
---|
| 1256 | } |
---|
| 1257 | b+=Nentries*Rhswidth; |
---|
| 1258 | |
---|
| 1259 | /* Skip any interleaved Guess/eXact vectors */ |
---|
| 1260 | |
---|
| 1261 | for (i=0;i<stride;i++) { |
---|
| 1262 | col += Rhswidth; |
---|
| 1263 | if ( col >= ( maxcol<linel?maxcol:linel ) ) { |
---|
| 1264 | fgets(line, BUFSIZ, in_file); |
---|
| 1265 | linel= strchr(line,'\n')-line; |
---|
| 1266 | if ( sscanf(line,"%*s") < 0 ) |
---|
| 1267 | IOHBTerminate("iohb.c: Null (or blank) line in auxillary vector data region of HB file.\n"); |
---|
| 1268 | col = 0; |
---|
| 1269 | } |
---|
| 1270 | } |
---|
| 1271 | |
---|
| 1272 | } |
---|
| 1273 | |
---|
| 1274 | |
---|
| 1275 | fclose(in_file); |
---|
| 1276 | return Nrhs; |
---|
| 1277 | } |
---|
| 1278 | |
---|
| 1279 | int readHB_newaux_char(const char* filename, const char AuxType, char** b, char** Rhsfmt) |
---|
| 1280 | { |
---|
| 1281 | FILE *in_file; |
---|
| 1282 | int Ptrcrd, Indcrd, Valcrd, Rhscrd; |
---|
| 1283 | int Nrow,Ncol,Nnzero,Nrhs; |
---|
| 1284 | int Rhsperline, Rhswidth, Rhsprec; |
---|
| 1285 | int Rhsflag; |
---|
| 1286 | char Title[73], Key[9], Type[4], Rhstype[4]; |
---|
| 1287 | char Ptrfmt[17], Indfmt[17], Valfmt[21]; |
---|
| 1288 | |
---|
| 1289 | if ((in_file = fopen( filename, "r")) == NULL) { |
---|
| 1290 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 1291 | return 0; |
---|
| 1292 | } |
---|
| 1293 | |
---|
| 1294 | *Rhsfmt = (char *)malloc(21*sizeof(char)); |
---|
| 1295 | if ( *Rhsfmt == NULL ) IOHBTerminate("Insufficient memory for Rhsfmt."); |
---|
| 1296 | readHB_header(in_file, Title, Key, Type, &Nrow, &Ncol, &Nnzero, &Nrhs, |
---|
| 1297 | Ptrfmt, Indfmt, Valfmt, (*Rhsfmt), |
---|
| 1298 | &Ptrcrd, &Indcrd, &Valcrd, &Rhscrd, Rhstype); |
---|
| 1299 | fclose(in_file); |
---|
| 1300 | if ( Nrhs == 0 ) { |
---|
| 1301 | fprintf(stderr,"Warn: Requested read of aux vector(s) when none are present.\n"); |
---|
| 1302 | return 0; |
---|
| 1303 | } else { |
---|
| 1304 | ParseRfmt(*Rhsfmt,&Rhsperline,&Rhswidth,&Rhsprec,&Rhsflag); |
---|
| 1305 | if ( Type[0] == 'C' ) { |
---|
| 1306 | fprintf(stderr, "Warning: Reading complex aux vector(s) from HB file %s.",filename); |
---|
| 1307 | fprintf(stderr, " Real and imaginary parts will be interlaced in b[]."); |
---|
| 1308 | *b = (char *)malloc(Nrow*Nrhs*Rhswidth*sizeof(char)*2); |
---|
| 1309 | if ( *b == NULL ) IOHBTerminate("Insufficient memory for rhs.\n"); |
---|
| 1310 | return readHB_aux_char(filename, AuxType, *b); |
---|
| 1311 | } else { |
---|
| 1312 | *b = (char *)malloc(Nrow*Nrhs*Rhswidth*sizeof(char)); |
---|
| 1313 | if ( *b == NULL ) IOHBTerminate("Insufficient memory for rhs.\n"); |
---|
| 1314 | return readHB_aux_char(filename, AuxType, *b); |
---|
| 1315 | } |
---|
| 1316 | } |
---|
| 1317 | } |
---|
| 1318 | |
---|
| 1319 | int writeHB_mat_char(const char* filename, int M, int N, |
---|
| 1320 | int nz, const int colptr[], const int rowind[], |
---|
| 1321 | const char val[], int Nrhs, const char rhs[], |
---|
| 1322 | const char guess[], const char exact[], |
---|
| 1323 | const char* Title, const char* Key, const char* Type, |
---|
| 1324 | char* Ptrfmt, char* Indfmt, char* Valfmt, char* Rhsfmt, |
---|
| 1325 | const char* Rhstype) |
---|
| 1326 | { |
---|
| 1327 | /****************************************************************************/ |
---|
| 1328 | /* The writeHB function opens the named file and writes the specified */ |
---|
| 1329 | /* matrix and optional right-hand-side(s) to that file in Harwell-Boeing */ |
---|
| 1330 | /* format. */ |
---|
| 1331 | /* */ |
---|
| 1332 | /* For a description of the Harwell Boeing standard, see: */ |
---|
| 1333 | /* Duff, et al., ACM TOMS Vol.15, No.1, March 1989 */ |
---|
| 1334 | /* */ |
---|
| 1335 | /****************************************************************************/ |
---|
| 1336 | FILE *out_file; |
---|
| 1337 | int i,j,acount,linemod,entry,offset; |
---|
| 1338 | int totcrd, ptrcrd, indcrd, valcrd, rhscrd; |
---|
| 1339 | int nvalentries, nrhsentries; |
---|
| 1340 | int Ptrperline, Ptrwidth, Indperline, Indwidth; |
---|
| 1341 | int Rhsperline, Rhswidth, Rhsprec; |
---|
| 1342 | int Rhsflag; |
---|
| 1343 | int Valperline, Valwidth, Valprec; |
---|
| 1344 | int Valflag; /* Indicates 'E','D', or 'F' float format */ |
---|
| 1345 | char pformat[16],iformat[16],vformat[19],rformat[19]; |
---|
| 1346 | |
---|
| 1347 | if ( Type[0] == 'C' ) { |
---|
| 1348 | nvalentries = 2*nz; |
---|
| 1349 | nrhsentries = 2*M; |
---|
| 1350 | } else { |
---|
| 1351 | nvalentries = nz; |
---|
| 1352 | nrhsentries = M; |
---|
| 1353 | } |
---|
| 1354 | |
---|
| 1355 | if ( filename != NULL ) { |
---|
| 1356 | if ( (out_file = fopen( filename, "w")) == NULL ) { |
---|
| 1357 | fprintf(stderr,"Error: Cannot open file: %s\n",filename); |
---|
| 1358 | return 0; |
---|
| 1359 | } |
---|
| 1360 | } else out_file = stdout; |
---|
| 1361 | |
---|
| 1362 | if ( Ptrfmt == NULL ) Ptrfmt = "(8I10)"; |
---|
| 1363 | ParseIfmt(Ptrfmt,&Ptrperline,&Ptrwidth); |
---|
| 1364 | sprintf(pformat,"%%%dd",Ptrwidth); |
---|
| 1365 | |
---|
| 1366 | if ( Indfmt == NULL ) Indfmt = Ptrfmt; |
---|
| 1367 | ParseIfmt(Indfmt,&Indperline,&Indwidth); |
---|
| 1368 | sprintf(iformat,"%%%dd",Indwidth); |
---|
| 1369 | |
---|
| 1370 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 1371 | if ( Valfmt == NULL ) Valfmt = "(4E20.13)"; |
---|
| 1372 | ParseRfmt(Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag); |
---|
| 1373 | sprintf(vformat,"%%%ds",Valwidth); |
---|
| 1374 | } |
---|
| 1375 | |
---|
| 1376 | ptrcrd = (N+1)/Ptrperline; |
---|
| 1377 | if ( (N+1)%Ptrperline != 0) ptrcrd++; |
---|
| 1378 | |
---|
| 1379 | indcrd = nz/Indperline; |
---|
| 1380 | if ( nz%Indperline != 0) indcrd++; |
---|
| 1381 | |
---|
| 1382 | valcrd = nvalentries/Valperline; |
---|
| 1383 | if ( nvalentries%Valperline != 0) valcrd++; |
---|
| 1384 | |
---|
| 1385 | if ( Nrhs > 0 ) { |
---|
| 1386 | if ( Rhsfmt == NULL ) Rhsfmt = Valfmt; |
---|
| 1387 | ParseRfmt(Rhsfmt,&Rhsperline,&Rhswidth,&Rhsprec, &Rhsflag); |
---|
| 1388 | sprintf(rformat,"%%%ds",Rhswidth); |
---|
| 1389 | rhscrd = nrhsentries/Rhsperline; |
---|
| 1390 | if ( nrhsentries%Rhsperline != 0) rhscrd++; |
---|
| 1391 | if ( Rhstype[1] == 'G' ) rhscrd+=rhscrd; |
---|
| 1392 | if ( Rhstype[2] == 'X' ) rhscrd+=rhscrd; |
---|
| 1393 | rhscrd*=Nrhs; |
---|
| 1394 | } else rhscrd = 0; |
---|
| 1395 | |
---|
| 1396 | totcrd = 4+ptrcrd+indcrd+valcrd+rhscrd; |
---|
| 1397 | |
---|
| 1398 | |
---|
| 1399 | /* Print header information: */ |
---|
| 1400 | |
---|
| 1401 | fprintf(out_file,"%-72s%-8s\n%14d%14d%14d%14d%14d\n",Title, Key, totcrd, |
---|
| 1402 | ptrcrd, indcrd, valcrd, rhscrd); |
---|
| 1403 | fprintf(out_file,"%3s%11s%14d%14d%14d\n",Type," ", M, N, nz); |
---|
| 1404 | fprintf(out_file,"%-16s%-16s%-20s", Ptrfmt, Indfmt, Valfmt); |
---|
| 1405 | if ( Nrhs != 0 ) { |
---|
| 1406 | /* Print Rhsfmt on fourth line and */ |
---|
| 1407 | /* optional fifth header line for auxillary vector information: */ |
---|
| 1408 | fprintf(out_file,"%-20s\n%-14s%d\n",Rhsfmt,Rhstype,Nrhs); |
---|
| 1409 | } else fprintf(out_file,"\n"); |
---|
| 1410 | |
---|
| 1411 | offset = 1-_SP_base; /* if base 0 storage is declared (via macro definition), */ |
---|
| 1412 | /* then storage entries are offset by 1 */ |
---|
| 1413 | |
---|
| 1414 | /* Print column pointers: */ |
---|
| 1415 | for (i=0;i<N+1;i++) |
---|
| 1416 | { |
---|
| 1417 | entry = colptr[i]+offset; |
---|
| 1418 | fprintf(out_file,pformat,entry); |
---|
| 1419 | if ( (i+1)%Ptrperline == 0 ) fprintf(out_file,"\n"); |
---|
| 1420 | } |
---|
| 1421 | |
---|
| 1422 | if ( (N+1) % Ptrperline != 0 ) fprintf(out_file,"\n"); |
---|
| 1423 | |
---|
| 1424 | /* Print row indices: */ |
---|
| 1425 | for (i=0;i<nz;i++) |
---|
| 1426 | { |
---|
| 1427 | entry = rowind[i]+offset; |
---|
| 1428 | fprintf(out_file,iformat,entry); |
---|
| 1429 | if ( (i+1)%Indperline == 0 ) fprintf(out_file,"\n"); |
---|
| 1430 | } |
---|
| 1431 | |
---|
| 1432 | if ( nz % Indperline != 0 ) fprintf(out_file,"\n"); |
---|
| 1433 | |
---|
| 1434 | /* Print values: */ |
---|
| 1435 | |
---|
| 1436 | if ( Type[0] != 'P' ) { /* Skip if pattern only */ |
---|
| 1437 | for (i=0;i<nvalentries;i++) |
---|
| 1438 | { |
---|
| 1439 | fprintf(out_file,vformat,val+i*Valwidth); |
---|
| 1440 | if ( (i+1)%Valperline == 0 ) fprintf(out_file,"\n"); |
---|
| 1441 | } |
---|
| 1442 | |
---|
| 1443 | if ( nvalentries % Valperline != 0 ) fprintf(out_file,"\n"); |
---|
| 1444 | |
---|
| 1445 | /* Print right hand sides: */ |
---|
| 1446 | acount = 1; |
---|
| 1447 | linemod=0; |
---|
| 1448 | if ( Nrhs > 0 ) { |
---|
| 1449 | for (j=0;j<Nrhs;j++) { |
---|
| 1450 | for (i=0;i<nrhsentries;i++) |
---|
| 1451 | { |
---|
| 1452 | fprintf(out_file,rformat,rhs+i*Rhswidth); |
---|
| 1453 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 1454 | } |
---|
| 1455 | if ( acount%Rhsperline != linemod ) { |
---|
| 1456 | fprintf(out_file,"\n"); |
---|
| 1457 | linemod = (acount-1)%Rhsperline; |
---|
| 1458 | } |
---|
| 1459 | if ( Rhstype[1] == 'G' ) { |
---|
| 1460 | for (i=0;i<nrhsentries;i++) |
---|
| 1461 | { |
---|
| 1462 | fprintf(out_file,rformat,guess+i*Rhswidth); |
---|
| 1463 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 1464 | } |
---|
| 1465 | if ( acount%Rhsperline != linemod ) { |
---|
| 1466 | fprintf(out_file,"\n"); |
---|
| 1467 | linemod = (acount-1)%Rhsperline; |
---|
| 1468 | } |
---|
| 1469 | } |
---|
| 1470 | if ( Rhstype[2] == 'X' ) { |
---|
| 1471 | for (i=0;i<nrhsentries;i++) |
---|
| 1472 | { |
---|
| 1473 | fprintf(out_file,rformat,exact+i*Rhswidth); |
---|
| 1474 | if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n"); |
---|
| 1475 | } |
---|
| 1476 | if ( acount%Rhsperline != linemod ) { |
---|
| 1477 | fprintf(out_file,"\n"); |
---|
| 1478 | linemod = (acount-1)%Rhsperline; |
---|
| 1479 | } |
---|
| 1480 | } |
---|
| 1481 | } |
---|
| 1482 | } |
---|
| 1483 | |
---|
| 1484 | } |
---|
| 1485 | |
---|
| 1486 | if ( fclose(out_file) != 0){ |
---|
| 1487 | fprintf(stderr,"Error closing file in writeHB_mat_char().\n"); |
---|
| 1488 | return 0; |
---|
| 1489 | } else return 1; |
---|
| 1490 | |
---|
| 1491 | } |
---|
| 1492 | |
---|
| 1493 | int ParseIfmt(char* fmt, int* perline, int* width) |
---|
| 1494 | { |
---|
| 1495 | /*************************************************/ |
---|
| 1496 | /* Parse an *integer* format field to determine */ |
---|
| 1497 | /* width and number of elements per line. */ |
---|
| 1498 | /*************************************************/ |
---|
| 1499 | char *tmp; |
---|
| 1500 | if (fmt == NULL ) { |
---|
| 1501 | *perline = 0; *width = 0; return 0; |
---|
| 1502 | } |
---|
| 1503 | upcase(fmt); |
---|
| 1504 | tmp = strchr(fmt,'('); |
---|
| 1505 | tmp = substr(fmt,tmp - fmt + 1, strchr(fmt,'I') - tmp - 1); |
---|
| 1506 | *perline = atoi(tmp); |
---|
| 1507 | tmp = strchr(fmt,'I'); |
---|
| 1508 | tmp = substr(fmt,tmp - fmt + 1, strchr(fmt,')') - tmp - 1); |
---|
| 1509 | return *width = atoi(tmp); |
---|
| 1510 | } |
---|
| 1511 | |
---|
| 1512 | int ParseRfmt(char* fmt, int* perline, int* width, int* prec, int* flag) |
---|
| 1513 | { |
---|
| 1514 | /*************************************************/ |
---|
| 1515 | /* Parse a *real* format field to determine */ |
---|
| 1516 | /* width and number of elements per line. */ |
---|
| 1517 | /* Also sets flag indicating 'E' 'F' 'P' or 'D' */ |
---|
| 1518 | /* format. */ |
---|
| 1519 | /*************************************************/ |
---|
| 1520 | char* tmp; |
---|
| 1521 | char* tmp2; |
---|
| 1522 | char* tmp3; |
---|
| 1523 | int len; |
---|
| 1524 | |
---|
| 1525 | if (fmt == NULL ) { |
---|
| 1526 | *perline = 0; |
---|
| 1527 | *width = 0; |
---|
| 1528 | flag = NULL; |
---|
| 1529 | return 0; |
---|
| 1530 | } |
---|
| 1531 | |
---|
| 1532 | upcase(fmt); |
---|
| 1533 | if (strchr(fmt,'(') != NULL) fmt = strchr(fmt,'('); |
---|
| 1534 | if (strchr(fmt,')') != NULL) { |
---|
| 1535 | tmp2 = strchr(fmt,')'); |
---|
| 1536 | while ( strchr(tmp2+1,')') != NULL ) { |
---|
| 1537 | tmp2 = strchr(tmp2+1,')'); |
---|
| 1538 | } |
---|
| 1539 | *(tmp2+1) = (int) NULL; |
---|
| 1540 | } |
---|
| 1541 | if (strchr(fmt,'P') != NULL) /* Remove any scaling factor, which */ |
---|
| 1542 | { /* affects output only, not input */ |
---|
| 1543 | if (strchr(fmt,'(') != NULL) { |
---|
| 1544 | tmp = strchr(fmt,'P'); |
---|
| 1545 | if ( *(++tmp) == ',' ) tmp++; |
---|
| 1546 | tmp3 = strchr(fmt,'(')+1; |
---|
| 1547 | len = tmp-tmp3; |
---|
| 1548 | tmp2 = tmp3; |
---|
| 1549 | while ( *(tmp2+len) != (int) NULL ) { |
---|
| 1550 | *tmp2=*(tmp2+len); |
---|
| 1551 | tmp2++; |
---|
| 1552 | } |
---|
| 1553 | *(strchr(fmt,')')+1) = (int) NULL; |
---|
| 1554 | } |
---|
| 1555 | } |
---|
| 1556 | if (strchr(fmt,'E') != NULL) { |
---|
| 1557 | *flag = 'E'; |
---|
| 1558 | } else if (strchr(fmt,'D') != NULL) { |
---|
| 1559 | *flag = 'D'; |
---|
| 1560 | } else if (strchr(fmt,'F') != NULL) { |
---|
| 1561 | *flag = 'F'; |
---|
| 1562 | } else { |
---|
| 1563 | fprintf(stderr,"Real format %s in H/B file not supported.\n",fmt); |
---|
| 1564 | return 0; |
---|
| 1565 | } |
---|
| 1566 | tmp = strchr(fmt,'('); |
---|
| 1567 | tmp = substr(fmt,tmp - fmt + 1, strchr(fmt,*flag) - tmp - 1); |
---|
| 1568 | *perline = atoi(tmp); |
---|
| 1569 | tmp = strchr(fmt,*flag); |
---|
| 1570 | if ( strchr(fmt,'.') ) { |
---|
| 1571 | *prec = atoi( substr( fmt, strchr(fmt,'.') - fmt + 1, strchr(fmt,')') - strchr(fmt,'.')-1) ); |
---|
| 1572 | tmp = substr(fmt,tmp - fmt + 1, strchr(fmt,'.') - tmp - 1); |
---|
| 1573 | } else { |
---|
| 1574 | tmp = substr(fmt,tmp - fmt + 1, strchr(fmt,')') - tmp - 1); |
---|
| 1575 | } |
---|
| 1576 | return *width = atoi(tmp); |
---|
| 1577 | } |
---|
| 1578 | |
---|
| 1579 | char* substr(const char* S, const int pos, const int len) |
---|
| 1580 | { |
---|
| 1581 | int i; |
---|
| 1582 | char *SubS; |
---|
| 1583 | if ( pos+len <= strlen(S)) { |
---|
| 1584 | SubS = (char *)malloc(len+1); |
---|
| 1585 | if ( SubS == NULL ) IOHBTerminate("Insufficient memory for SubS."); |
---|
| 1586 | for (i=0;i<len;i++) SubS[i] = S[pos+i]; |
---|
| 1587 | SubS[len] = (char) NULL; |
---|
| 1588 | } else { |
---|
| 1589 | SubS = NULL; |
---|
| 1590 | } |
---|
| 1591 | return SubS; |
---|
| 1592 | } |
---|
| 1593 | |
---|
| 1594 | #include<ctype.h> |
---|
| 1595 | void upcase(char* S) |
---|
| 1596 | { |
---|
| 1597 | /* Convert S to uppercase */ |
---|
| 1598 | int i,len; |
---|
| 1599 | if ( S == NULL ) return; |
---|
| 1600 | len = strlen(S); |
---|
| 1601 | for (i=0;i< len;i++) |
---|
| 1602 | S[i] = toupper(S[i]); |
---|
| 1603 | } |
---|
| 1604 | |
---|
| 1605 | void IOHBTerminate(char* message) |
---|
| 1606 | { |
---|
| 1607 | fprintf(stderr,message); |
---|
| 1608 | exit(1); |
---|
| 1609 | } |
---|
| 1610 | |
---|