1 | #!/usr/bin/perl |
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2 | |
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3 | # quick, very dirty little script so that we can put all the |
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4 | # information for building a residue book set (except the original |
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5 | # partitioning) in one spec file. |
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6 | |
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7 | #eg: |
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8 | |
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9 | # >res0_128_128 interleaved |
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10 | # haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9 |
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11 | # :1 res0_128_128_1.vqd, 4, nonseq cull, 0 +- 1 |
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12 | # :2 res0_128_128_2.vqd, 4, nonseq, 0 +- 1(.7) 2 |
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13 | # :3 res0_128_128_3.vqd, 4, nonseq, 0 +- 1(.7) 3 5 |
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14 | # :4 res0_128_128_4.vqd, 2, nonseq, 0 +- 1(.7) 3 5 8 11 |
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15 | # :5 res0_128_128_5.vqd, 1, nonseq, 0 +- 1 3 5 8 11 14 17 20 24 28 31 35 39 |
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16 | |
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17 | |
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18 | die "Could not open $ARGV[0]: $!" unless open (F,$ARGV[0]); |
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19 | |
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20 | $goflag=0; |
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21 | while($line=<F>){ |
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22 | |
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23 | print "#### $line"; |
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24 | if($line=~m/^GO/){ |
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25 | $goflag=1; |
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26 | next; |
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27 | } |
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28 | |
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29 | if($goflag==0){ |
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30 | if($line=~m/\S+/ && !($line=~m/^\#/) ){ |
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31 | my $command=$line; |
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32 | print ">>> $command"; |
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33 | die "Couldn't shell command.\n\tcommand:$command\n" |
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34 | if syst($command); |
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35 | } |
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36 | next; |
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37 | } |
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38 | |
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39 | # >res0_128_128 |
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40 | if($line=~m/^>(\S+)\s+(\S*)/){ |
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41 | # set the output name |
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42 | $globalname=$1; |
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43 | $interleave=$2; |
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44 | next; |
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45 | } |
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46 | |
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47 | # haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9 |
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48 | if($line=~m/^h(.*)/){ |
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49 | # build a huffman book (no mapping) |
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50 | my($name,$datafile,$bookname,$interval,$range)=split(' ',$1); |
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51 | |
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52 | # check the desired subdir to see if the data file exists |
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53 | if(-e $datafile){ |
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54 | my $command="cp $datafile $bookname.tmp"; |
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55 | print ">>> $command\n"; |
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56 | die "Couldn't access partition data file.\n\tcommand:$command\n" |
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57 | if syst($command); |
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58 | |
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59 | my $command="huffbuild $bookname.tmp $interval"; |
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60 | print ">>> $command\n"; |
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61 | die "Couldn't build huffbook.\n\tcommand:$command\n" |
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62 | if syst($command); |
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63 | |
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64 | my $command="rm $bookname.tmp"; |
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65 | print ">>> $command\n"; |
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66 | die "Couldn't remove temporary file.\n\tcommand:$command\n" |
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67 | if syst($command); |
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68 | }else{ |
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69 | my $command="huffbuild $bookname.tmp 0-$range"; |
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70 | print ">>> $command\n"; |
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71 | die "Couldn't build huffbook.\n\tcommand:$command\n" |
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72 | if syst($command); |
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73 | |
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74 | } |
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75 | next; |
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76 | } |
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77 | |
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78 | # :1 res0_128_128_1.vqd, 4, nonseq, 0 +- 1 |
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79 | if($line=~m/^:(.*)/){ |
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80 | my($namedata,$dim,$seqp,$vals)=split(',',$1); |
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81 | my($name,$datafile)=split(' ',$namedata); |
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82 | # build value list |
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83 | my$plusminus="+"; |
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84 | my$list; |
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85 | my$thlist; |
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86 | my$count=0; |
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87 | foreach my$val (split(' ',$vals)){ |
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88 | if($val=~/\-?\+?\d+/){ |
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89 | my$th; |
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90 | |
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91 | # got an explicit threshhint? |
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92 | if($val=~/([0-9\.]+)\(([^\)]+)/){ |
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93 | $val=$1; |
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94 | $th=$2; |
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95 | } |
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96 | |
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97 | if($plusminus=~/-/){ |
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98 | $list.="-$val "; |
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99 | if(defined($th)){ |
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100 | $thlist.="," if(defined($thlist)); |
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101 | $thlist.="-$th"; |
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102 | } |
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103 | $count++; |
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104 | } |
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105 | if($plusminus=~/\+/){ |
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106 | $list.="$val "; |
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107 | if(defined($th)){ |
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108 | $thlist.="," if(defined($thlist)); |
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109 | $thlist.="$th"; |
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110 | } |
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111 | $count++; |
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112 | } |
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113 | }else{ |
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114 | $plusminus=$val; |
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115 | } |
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116 | } |
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117 | die "Couldn't open temp file temp$$.vql: $!" unless |
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118 | open(G,">temp$$.vql"); |
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119 | print G "$count $dim 0 "; |
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120 | if($seqp=~/non/){ |
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121 | print G "0\n$list\n"; |
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122 | }else{ |
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123 | print G "1\n$list\n"; |
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124 | } |
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125 | close(G); |
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126 | |
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127 | my $command="latticebuild temp$$.vql > $globalname$name.vqh"; |
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128 | print ">>> $command\n"; |
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129 | die "Couldn't build latticebook.\n\tcommand:$command\n" |
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130 | if syst($command); |
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131 | |
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132 | my $command="latticehint $globalname$name.vqh $thlist > temp$$.vqh"; |
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133 | print ">>> $command\n"; |
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134 | die "Couldn't pre-hint latticebook.\n\tcommand:$command\n" |
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135 | if syst($command); |
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136 | |
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137 | if(-e $datafile){ |
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138 | |
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139 | if($interleave=~/non/){ |
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140 | $restune="res1tune"; |
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141 | }else{ |
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142 | $restune="res0tune"; |
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143 | } |
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144 | |
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145 | if($seqp=~/cull/){ |
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146 | my $command="$restune temp$$.vqh $datafile 1 > $globalname$name.vqh"; |
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147 | print ">>> $command\n"; |
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148 | die "Couldn't tune latticebook.\n\tcommand:$command\n" |
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149 | if syst($command); |
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150 | }else{ |
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151 | my $command="$restune temp$$.vqh $datafile > $globalname$name.vqh"; |
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152 | print ">>> $command\n"; |
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153 | die "Couldn't tune latticebook.\n\tcommand:$command\n" |
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154 | if syst($command); |
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155 | } |
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156 | |
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157 | my $command="latticehint $globalname$name.vqh $thlist > temp$$.vqh"; |
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158 | print ">>> $command\n"; |
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159 | die "Couldn't post-hint latticebook.\n\tcommand:$command\n" |
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160 | if syst($command); |
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161 | |
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162 | }else{ |
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163 | print "No matching training file; leaving this codebook untrained.\n"; |
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164 | } |
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165 | |
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166 | my $command="mv temp$$.vqh $globalname$name.vqh"; |
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167 | print ">>> $command\n"; |
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168 | die "Couldn't rename latticebook.\n\tcommand:$command\n" |
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169 | if syst($command); |
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170 | |
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171 | my $command="rm temp$$.vql"; |
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172 | print ">>> $command\n"; |
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173 | die "Couldn't remove temp files.\n\tcommand:$command\n" |
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174 | if syst($command); |
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175 | |
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176 | next; |
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177 | } |
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178 | } |
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179 | |
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180 | $command="rm -f temp$$.vqd"; |
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181 | print ">>> $command\n"; |
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182 | die "Couldn't remove temp files.\n\tcommand:$command\n" |
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183 | if syst($command); |
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184 | |
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185 | sub syst{ |
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186 | system(@_)/256; |
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187 | } |
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